About Me Softwares Research Publications Curriculum Vitae

Sanchit Misra    Department of Electrical Engineering and Computer Science Northwestern University   L-460, Technological Institute 2145 Sheridan Road, Evanston, IL, 60208 Phone: +1-847-530-4498 Email: smi539 AT eecs DOT northwestern DOT edu

About Me

I am a PhD student at Department of Electrical Engineering and Computer Science at Northwestern University since September, 2006. I work in the Center for Ultra Scale Computing and Information Security under the guidance of Prof. Alok Choudhary. Before joining Northwestern University, I worked at Trilogy, Bangalore, India.

Education

PhD, Computer Science, Northwestern University, Current. Bachelor of Technology, Computer Science and Engineering, Indian Institute of Technology, Kharagpur, May, 2005.

Industry Experience

Summer Intern, Intel, Hillsboro, OR (June, 2007 - September, 2007) Software Engineer, Trilogy, Bangalore, India (July, 2005 - July, 2006) Summer Intern, Compsys team, INRIA, ENS, Lyon, France (May, 2004 - July, 2004)

Softwares

AGILE: AliGnIng Long Reads

Research Interests

High Speed Sequence Alignment for Next Generation Sequencers : looking for algorithmic, parallel computing, hardware implementation approaches to achieve efficient sequence alignment techniques; Data Mining and it's application in Bioinformatics and Proteomics, Acceleration of data mining kernels using hardware/software techniques, Application Specific Computer Architecture.

Publications

Sanchit Misra, Ankit Agrawal, Wei-keng Liao, Alok Choudhary. Anatomy of a Hash-based Long Read Sequence Mapping Algorithm for Next Generation DNA Sequencing. Bioinformatics 2010; doi: 10.1093/bioinformatics/btq648. Ankit Agrawal, Sanchit Misra, Daniel Honbo, and Alok Choudhary. MPIPairwiseStatSig: Parallel Pairwise Statistical Signicance Estimation of Local Sequence Alignment. In ECMLS proceedings of HPDC 2010, pp. 470-476. Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao, Alok Choudhary and Simon Lin. pFANGS: Parallel High Speed Sequence Mapping for Next Generation 454-Roche Sequencing Reads. In Proc. Ninth IEEE International Workshop on High Performance Computational Biology (IPDPS 2010), April, 2010, Atlanta, GA. Sanchit Misra, Ramanathan Narayanan, Simon Lin and Alok Choudhary. FANGS: High Speed Sequence Mapping for Next Generation Sequencing Reads. In Proceedings of ACM Symposium of Applied Computing (ACM SAC), March 22-26, 2010, Sierre, Switzerland. Ramanathan Narayanan, Sanchit Misra, Simon Lin and Alok Choudhary. Mining Protein Interactions from Text using Convolution Kernels. In AIBDM 09, held in conjunction with Pacific Asia Conference on Knowledge Discovery and Data mining (PAKDD 2009), April 27-30, 2009, Bangkok. Sanchit Misra, Ramanathan Narayanan, Simon Lin and Alok Choudhary. HiSSS: A High Speed Sequence Search Method for Next Generation Sequences. In Intelligent Systems for Molecular Biology (ISMB)[Poster] , Toronto, Canada, July 2008. Ramanathan Narayanan, Sanchit Misra, Simon Lin and Alok Choudhary. Mining Protein Interactions from Text using Convolution Kernels. In Intelligent Systems for Molecular Biology (ISMB)[Poster] , Toronto, Canada, July 2008. Sanchit Misra, Ramanathan Narayanan, Daniel Honbo and Alok Choudhary. (Book Chapter) "High Performance Distributed Data Mining". Next Generation of Data Mining , 2008, CRC Press. D. Bild, S. Misra, T. Chantem, P. Kumar, R. P. Dick, X. S. Hu, L. Shang, and A. Choudhary, Temperature-Aware Test Scheduling for Multiprocessor Systems-On-Chip. In Proceedings International Conference on Computer-Aided Design, San Jose, CA, Nov. 2008. A. Das, S. Misra, S. Joshi, J. Zambreno, G. Memik and A. Choudhary. An Efficient FPGA Implementation of Principal Component Analysis based Network Intrusion Detection System. In Proceedings of Design, Automation & Test in Europe (DATE), Munich, Germany, March 2008.

Last modified: 01/09/2008 4:06PM CST